diff --git a/VERSION b/VERSION
index 4a36342fcab700951adb18ae7adc930997f6c3f4..cb2b00e4f7a7b959305c611112b7aac6ac4e9de7 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-3.0.0
+3.0.1
diff --git a/dist-exclude b/dist-exclude
index 1f4e719688a406371ec774b60f814a171289bed3..af4fa7f557c413284b46c29e0b715d23b4f949a4 100644
--- a/dist-exclude
+++ b/dist-exclude
@@ -10,6 +10,7 @@ library/Demos/MultiRegions/ExtraDemos
 solvers/ADR2DManifoldSolver
 solvers/FitzHughNagumoSolver
 solvers/CardiacEPSolver
+solvers/APESolver
 docs/*.doc
 docs/arch
 docs/emacs
@@ -23,3 +24,5 @@ docs/html/*.html
 docs/html/*.php
 docs/html/*.css
 utilities/PreProcessing/Extras
+utilities/PostProcessing/FldCalcBCs.cpp
+utilities/PostProcessing/MoveMesh.cpp
diff --git a/docs/html/compile_linux.html b/docs/html/compile_linux.html
index 8e6996eeced61c4a121523517163962a9faa9bec..a3bdc44d98d01a2ab256c50380cd9e6f9328bf31 100644
--- a/docs/html/compile_linux.html
+++ b/docs/html/compile_linux.html
@@ -189,8 +189,9 @@
           indicate a directory by following its name with a forward slash.
         </p>
         <ol>
-          <li>
-            Put the <em>ThirdParty/</em> directory in
+            <li>
+            Unpack the <em>ThirdParty-3.x.x.tar.gz</em> file. Rename the
+            resulting directory to <em>ThirdParty/</em> and put it in
             <em>Nektar++/</em>. (This will mean <em>library/</em> and
             <em>ThirdParty/</em> are both sub-directories of the original
             <em>Nektar++/</em>.)
diff --git a/docs/html/compile_osx.html b/docs/html/compile_osx.html
index 6b7dbc1d0675018025a3c3c7a21ad19da53b0aa3..fdf12f6db77d58b6a676df9be43c8508758e6b5f 100644
--- a/docs/html/compile_osx.html
+++ b/docs/html/compile_osx.html
@@ -121,7 +121,7 @@ name with a forward slash.</p>
         
 <ol>
 
-          <li>Put the <em>ThirdParty/</em> directory in <em>Nektar++/</em>. (This will mean <em>library/</em> and <em>ThirdParty/</em> are both sub-directories of the original <em>Nektar++/</em>.)</li>
+    <li>Unpack the <em>ThirdParty-3.x.x.tar.gz</em> file. Rename the resulting directory to <em>ThirdParty/</em> and put it in <em>Nektar++/</em>. (This will mean <em>library/</em> and <em>ThirdParty/</em> are both sub-directories of the original <em>Nektar++/</em>.)</li>
 
           <li>At the terminal in <em>ThirdParty/</em>, extract the tinyxml_2_4_3.zip archive with 
 <div class="code"><pre>unzip tinyxml_2_4_3.zip</pre></div>
diff --git a/docs/html/compile_windows.html b/docs/html/compile_windows.html
index 8f62cd52a23b08cbdde722f43db88ac3fc028e5b..d403a31b250e10672dc7a125294b3212ade3471a 100644
--- a/docs/html/compile_windows.html
+++ b/docs/html/compile_windows.html
@@ -120,7 +120,7 @@ Material</a></p>
       <a name="Organizing_the_ThirdParty_Source_Files"></a> Organizing  the ThirdParty Source Files</h3>
     <p align="left">You will be given a Nektar++ directory and a ThirdParty directory (includes needed libraries from output sources). These need to be organized into the correct directory heirarchy for CMake to find all of the required files. I will indicate a directory by following its name with a backslash.</p>
     <ol>
-      <li>Put the ThirdParty directory in <em>Nektar++\</em>. (This will mean <em>library\</em> and <em>ThirdParty\</em> are both sub-directories of the original <em>Nektar++\</em>.)</li>
+        <li>Unpack the <em>ThirdParty-3.x.x.tar.gz</em> file and rename the resulting directory to <em>ThirdParty</em>. Put the ThirdParty directory in <em>Nektar++\</em>. (This will mean <em>library\</em> and <em>ThirdParty\</em> are both sub-directories of the original <em>Nektar++\</em>.)</li>
       <li>In <em>ThirdParty\</em>, extract the tinyxml_2_4_3.zip archive. This will create <em>tinyxml\</em>. </li>
       <li>
         Extract the loki-0.1.3.tar.bz2 archive. This will create <em>loki-0.1.3\</em>.
diff --git a/docs/html/downloads.php b/docs/html/downloads.php
index df3b73b7d0aedd52b8d0c788fd9f7a8375b41c1c..ae8ea77d1d631751d80ed2ccaa3c25b3460a57f3 100644
--- a/docs/html/downloads.php
+++ b/docs/html/downloads.php
@@ -47,6 +47,11 @@ Material</a></p>
     	<!-- InstanceEndEditable -->
         <hr>
 	<ul>
+      <li>
+         <h3 align="left">release 3.0.1 (October 2011) </h3>
+         <p><a href="downloads/nektar++-3.0.1.tar.gz">Nektar++ Linux/Windows Code</a></p>
+         <p><a href="downloads/ThirdParty-3.0.1.tar.gz">Required Third Party Libraries</a></p>
+      </li>
       <li>
          <h3 align="left">release 3.0.0 (August 2011) </h3>
          <p><a href="downloads/nektar++-3.0.0.tar.gz">Nektar++ Linux/Windows Code</a></p>