author={M. Courtemanche\, R. J. Ramirez and S. Nattel},
title={Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model},
...
...
@@ -103,7 +103,7 @@
pages={1501-1526},
year={1991},
}
@article{TuPa06,
author={K. H. W. J. ten Tusscher and A. V. Panfilov},
title={Alternans and spiral breakup in a human ventricular tissue model},
...
...
@@ -123,7 +123,7 @@
pages={4331-51},
year={2011},
}
@article{ShKa96,
title={Tetrahedral< i> hp</i> Finite Elements: Algorithms and Flow Simulations},
author={Sherwin, SJ and Karniadakis, G Em},
...
...
@@ -378,9 +378,9 @@ year={2011}
}
@article{GuSh03,
Author="J.L. Guermond and J. Shen",
title="Velocity-correction projection methods for incompressible flows",
journal="SIAM J. Numer.\ Anal.",
Author="J.L. Guermond and J. Shen",
title="Velocity-correction projection methods for incompressible flows",
journal="SIAM J. Numer.\ Anal.",
volume=41,
pages="112--134",
year=2003
...
...
@@ -460,3 +460,18 @@ year={2011}
pages={1079-1097},
}
@inproceedings{TuPeMo16,
abstract={The generation of sufficiently high quality unstructured high-order meshes remains a significant obstacle in the adoption of high-order methods. However, there is little consensus on which approach is the most robust, fastest and produces the 'best' meshes. We aim to provide a route to investigate this question, by examining popular high-order mesh generation methods in the context of an efficient variational framework for the generation of curvilinear meshes. By considering previous works in a variational form, we are able to compare their characteristics and study their robustness. Alongside a description of the theory and practical implementation details, including an efficient multi-threading parallelisation strategy, we demonstrate the effectiveness of the framework, showing how it can be used for both mesh quality optimisation and untangling of invalid meshes.},
author={Turner, M and Peir{\'{o}}, J and Moxey, D},
booktitle={25th International Meshing Roundtable},
The Fieldconvert range option \inltt{-r} allows the user to specify
a sub-range of the mesh (computational domain) by using an
...
...
@@ -121,7 +121,7 @@ possibly also Reynolds stresses) into single file;
\item\inltt{extract}: Extract a boundary field;
\item\inltt{homplane}: Extract a plane from 3DH1D expansions;
\item\inltt{homstretch}: Stretch a 3DH1D expansion by an integer factor;
\item\inltt{innerproduct}: take the inner product between one or a series of fields with another field (or series of fields).
\item\inltt{innerproduct}: take the inner product between one or a series of fields with another field (or series of fields).
\item\inltt{interpfield}: Interpolates one field to another, requires fromxml, fromfld to be defined;
\item\inltt{interppointdatatofld}: Interpolates given discrete data using a finite difference approximation to a fld file given an xml file;
\item\inltt{interppoints}: Interpolates a set of points to another, requires fromfld and fromxml to be defined, a line or plane of points can be defined;
...
...
@@ -130,7 +130,7 @@ possibly also Reynolds stresses) into single file;
\item\inltt{qualitymetric}: Evaluate a quality metric of the underlying mesh to show mesh quality;
\item\inltt{meanmode}: Extract mean mode (plane zero) of 3DH1D expansions;
\item\inltt{pointdatatofld}: Given discrete data at quadrature points
project them onto an expansion basis and output fld file;
project them onto an expansion basis and output fld file;
\item\inltt{printfldnorms}: Print L2 and LInf norms to stdout;
where \inltt{npts1,npts2,npts3} is the number of equispaced points in each
direction and $(xmin,ymin,zmin)$ and $(xmax,ymax,zmax3)$
define the limits of the box of points.
where \inltt{npts1,npts2,npts3} is the number of equispaced points in each
direction and $(xmin,ymin,zmin)$ and $(xmax,ymax,zmax3)$
define the limits of the box of points.
For the plane and box interpolation there is an additional optional
argument \inltt{cp=p0,q} which adds to the interpolated fields the value of
...
...
@@ -568,7 +568,7 @@ pressure and $q$ is the free stream dynamics pressure. If the input
does not contain a field ``p'' or a velocity field ``u,v,w'' then $cp$
and $cp0$ are not evaluated accordingly
%
\begin{notebox}
\begin{notebox}
This module runs in parallel for the plane and box extraction of points. In this case a series of .dat files are generated that can be concatinated together. Other options do not run in parallel.
\end{notebox}
%
...
...
@@ -611,7 +611,7 @@ have these as separate options.
In addition to the \inltt{smooth} or \inltt{globalcondense} options
you can specify \inltt{removesmallcontour}=100 which will remove
separate isocontours of less than 100 triangles.
separate isocontours of less than 100 triangles.
\begin{notebox}
Currently this option is only set up for triangles, quadrilaterals,
...
...
@@ -633,7 +633,7 @@ keep.
The output file \inltt{jacenergy.fld} can be processed in a similar
way as described in section \ref{s:utilities:fieldconvert:sub:convert}
to visualise the result either in Tecplot, Paraview or VisIt.
to visualise the result either in Tecplot, Paraview or VisIt.
