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Commit 647d3a1a authored by Michael Turner's avatar Michael Turner
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revert all broken code

parent 80f83b85
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library/NekMeshUtils/2DGenerator/2DGenerator.cpp
View file @ 647d3a1a
......@@ -67,7 +67,7 @@ Generator2D::~Generator2D()
void Generator2D::Process()
{
if (m_mesh->m_verbose)
/*if (m_mesh->m_verbose)
{
cout << endl << "2D meshing" << endl;
cout << endl << "\tCurve meshing:" << endl << endl;
......@@ -127,88 +127,9 @@ void Generator2D::Process()
m_blCurves);
m_thickness_ID = m_thickness.DefineFunction(
"x y z", m_config["blthick"].as<string>());
}
// The logic in the three loops below relies on the assumption that
// node->GetNumCadCurve() only returns the number of CAD curves that have
// been meshed. This allows us to detect which curves have a BL and which do
// not. The logic will have to be reworked in the near future.
// linear mesh all curves with a BL
for (int i = 0; i < m_blCurves.size(); i++)
{
ASSERTL0(m_blCurves[i] <= m_mesh->m_cad->GetNumCurve(),
"Invalid curve defined with boundary layer");
if (m_mesh->m_verbose)
{
LibUtilities::PrintProgressbar(i + 1, m_mesh->m_cad->GetNumCurve(),
"Curve progress");
}
m_curvemeshes[m_blCurves[i]] =
MemoryManager<CurveMesh>::AllocateSharedPtr(
m_blCurves[i], m_mesh, m_config["blthick"].as<string>());
m_curvemeshes[m_blCurves[i]]->Mesh();
}
// check curves with adjacent BLs
for (int i = 1; i <= m_mesh->m_cad->GetNumCurve(); i++)
{
vector<unsigned int>::iterator f =
find(m_blCurves.begin(), m_blCurves.end(), i);
if (f != m_blCurves.end())
{
continue;
}
vector<CADVertSharedPtr> verts =
m_mesh->m_cad->GetCurve(i)->GetVertex();
vector<NekDouble> offset(2);
offset[0] = 0.0;
offset[1] = 0.0;
for (int j = 0; j < 2; ++j)
{
NodeSharedPtr node = verts[j]->GetNode();
if (node->GetNumCadCurve())
{
Array<OneD, NekDouble> loc = node->GetLoc();
offset[j] = m_thickness.Evaluate(m_thickness_ID, loc[0], loc[1],
loc[2], 0.0);
}
}
m_curvemeshes[i] =
MemoryManager<CurveMesh>::AllocateSharedPtr(i, m_mesh, offset);
}
// linear mesh all other curves
for (int i = 1; i <= m_mesh->m_cad->GetNumCurve(); i++)
{
if (m_mesh->m_verbose)
{
LibUtilities::PrintProgressbar(i + m_blCurves.size(),
m_mesh->m_cad->GetNumCurve(),
"Curve progress");
}
vector<unsigned int>::iterator f =
find(m_blCurves.begin(), m_blCurves.end(), i);
if (f != m_blCurves.end())
{
continue;
}
m_curvemeshes[i]->Mesh();
}
}*/
if (m_config["periodic"].beenSet)
/*if (m_config["periodic"].beenSet)
{
// Override slave curves
......@@ -335,48 +256,59 @@ void Generator2D::Process()
}
cout << endl;
}
}
////////////////////////////////////////
}*/
EdgeSet::iterator it;
for (it = m_mesh->m_edgeSet.begin(); it != m_mesh->m_edgeSet.end(); it++)
if (m_mesh->m_verbose)
{
vector<NodeSharedPtr> ns;
ns.push_back((*it)->m_n1);
ns.push_back((*it)->m_n2);
// for each iterator create a LibUtilities::eSegement
// push segment into m_mesh->m_element[1]
// tag for the elements shoudl be the CAD number of the curves
ElmtConfig conf(LibUtilities::eSegment, 1, false, false);
vector<int> tags;
tags.push_back((*it)->m_parentCAD->GetId());
ElementSharedPtr E2 = GetElementFactory().CreateInstance(
LibUtilities::eSegment, conf, ns, tags);
cout << endl << "2D meshing" << endl;
cout << endl << "\tCurve meshing:" << endl << endl;
}
m_mesh->m_numNodes = m_mesh->m_cad->GetNumVerts();
m_thickness_ID =
m_thickness.DefineFunction("x y z", m_config["blthick"].as<string>());
ParseUtils::GenerateSeqVector(m_config["blcurves"].as<string>().c_str(),
m_blCurves);
m_mesh->m_element[1].push_back(E2);
// linear mesh all curves
for (int i = 1; i <= m_mesh->m_cad->GetNumCurve(); i++)
{
if (m_mesh->m_verbose)
{
LibUtilities::PrintProgressbar(i, m_mesh->m_cad->GetNumCurve(),
"Curve progress");
}
vector<unsigned int>::iterator f =
find(m_blCurves.begin(), m_blCurves.end(), i);
if (f == m_blCurves.end())
{
m_curvemeshes[i] =
MemoryManager<CurveMesh>::AllocateSharedPtr(i, m_mesh);
}
else
{
m_curvemeshes[i] = MemoryManager<CurveMesh>::AllocateSharedPtr(
i, m_mesh, m_config["blthick"].as<string>());
}
m_curvemeshes[i]->Mesh();
}
////////////////////////////////////////
if (m_config["blcurves"].beenSet)
{
// we need to do the boundary layer generation in a face by face basis
MakeBLPrep();
for (int i = 1; i <= m_mesh->m_cad->GetNumSurf(); i++)
{
MakeBL(i);
}
}
if (m_mesh->m_verbose)
{
cout << endl << "\tFace meshing:" << endl << endl;
}
// linear mesh all surfaces
for (int i = 1; i <= m_mesh->m_cad->GetNumSurf(); i++)
{
......@@ -385,19 +317,39 @@ void Generator2D::Process()
LibUtilities::PrintProgressbar(i, m_mesh->m_cad->GetNumSurf(),
"Face progress");
}
m_facemeshes[i] = MemoryManager<FaceMesh>::AllocateSharedPtr(
i, m_mesh, m_curvemeshes, 99 + i);
m_facemeshes[i]->Mesh();
}
////////////////////////////////////
EdgeSet::iterator it;
for (it = m_mesh->m_edgeSet.begin(); it != m_mesh->m_edgeSet.end(); it++)
{
vector<NodeSharedPtr> ns;
ns.push_back((*it)->m_n1);
ns.push_back((*it)->m_n2);
// for each iterator create a LibUtilities::eSegement
// push segment into m_mesh->m_element[1]
// tag for the elements shoudl be the CAD number of the curves
ElmtConfig conf(LibUtilities::eSegment, 1, false, false);
vector<int> tags;
tags.push_back((*it)->m_parentCAD->GetId());
ElementSharedPtr E2 = GetElementFactory().CreateInstance(
LibUtilities::eSegment, conf, ns, tags);
m_mesh->m_element[1].push_back(E2);
}
ProcessVertices();
ProcessEdges();
ProcessFaces();
ProcessElements();
ProcessComposites();
Report();
}
void Generator2D::MakeBLPrep()
......@@ -424,17 +376,13 @@ void Generator2D::MakeBLPrep()
void Generator2D::MakeBL(int faceid)
{
map<int, Array<OneD, NekDouble> > edgeNormals;
int eid = 0;
for (vector<unsigned>::iterator it = m_blCurves.begin();
it != m_blCurves.end(); ++it)
{
CADOrientation::Orientation edgeo =
m_mesh->m_cad->GetCurve(*it)->GetOrienationWRT(faceid);
vector<EdgeSharedPtr> es = m_curvemeshes[*it]->GetMeshEdges();
// on each !!!EDGE!!! calculate a normal
// always to the left unless edgeo is 1
// normal must be done in the parametric space (and then projected back)
......@@ -455,72 +403,58 @@ void Generator2D::MakeBL(int faceid)
NekDouble mag = sqrt(n[0] * n[0] + n[1] * n[1]);
n[0] /= mag;
n[1] /= mag;
Array<OneD, NekDouble> np = es[j]->m_n1->GetCADSurfInfo(faceid);
np[0] += n[0];
np[1] += n[1];
Array<OneD, NekDouble> loc = es[j]->m_n1->GetLoc();
Array<OneD, NekDouble> locp = m_mesh->m_cad->GetSurf(faceid)->P(np);
n[0] = locp[0] - loc[0];
n[1] = locp[1] - loc[1];
mag = sqrt(n[0] * n[0] + n[1] * n[1]);
n[0] /= mag;
n[1] /= mag;
edgeNormals[es[j]->m_id] = n;
}
}
bool adjust = m_config["bltadjust"].beenSet;
NekDouble divider = m_config["bltadjust"].as<NekDouble>();
bool adjustEverywhere = m_config["adjustblteverywhere"].beenSet;
if (divider < 2.0)
{
WARNINGL1(false, "BndLayerAdjustment too low, corrected to 2.0");
divider = 2.0;
}
map<NodeSharedPtr, NodeSharedPtr> nodeNormals;
map<NodeSharedPtr, vector<EdgeSharedPtr> >::iterator it;
for (it = m_nodesToEdge.begin(); it != m_nodesToEdge.end(); it++)
{
ASSERTL0(it->second.size() > 0 && it->second.size() < 3,
"weirdness, most likely bl_surfs are incorrect");
// if node is at the end of a BL curve, the "normal" node is found on
// the adjacent non-BL curve rather than computed through
// perpendicularity
if (it->second.size() < 2)
{
vector<pair<int, CADCurveSharedPtr> > curves =
it->first->GetCADCurves();
vector<EdgeSharedPtr> edges =
m_curvemeshes[curves[0].first]->GetMeshEdges();
vector<EdgeSharedPtr>::iterator ie =
find(edges.begin(), edges.end(), it->second[0]);
int rightCurve =
(ie == edges.end()) ? curves[0].first : curves[1].first;
vector<NodeSharedPtr> nodes =
m_curvemeshes[rightCurve]->GetMeshPoints();
nodeNormals[it->first] =
(nodes[0] == it->first) ? nodes[1] : nodes[nodes.size() - 2];
continue;
}
Array<OneD, NekDouble> n(3);
ASSERTL0(it->second.size() == 2,
"wierdness, most likely bl_surfs are incorrect");
Array<OneD, NekDouble> n1 = edgeNormals[it->second[0]->m_id];
Array<OneD, NekDouble> n2 = edgeNormals[it->second[1]->m_id];
n[0] = (n1[0] + n2[0]) / 2.0;
n[1] = (n1[1] + n2[1]) / 2.0;
NekDouble mag = sqrt(n[0] * n[0] + n[1] * n[1]);
n[0] /= mag;
n[1] /= mag;
NekDouble t = m_thickness.Evaluate(m_thickness_ID, it->first->m_x,
it->first->m_y, 0.0, 0.0);
// Adjust thickness according to angle between normals
if (adjust)
{
if (adjustEverywhere || it->first->GetNumCadCurve() > 1)
{
NekDouble angle = acos(n1[0] * n2[0] + n1[1] * n2[1]);
angle = (angle > M_PI) ? 2 * M_PI - angle : angle;
t /= cos(angle / divider);
}
}
n[0] = n[0] * t + it->first->m_x;
n[1] = n[1] * t + it->first->m_y;
n[2] = 0.0;
NodeSharedPtr nn = boost::shared_ptr<Node>(
new Node(m_mesh->m_numNodes++, n[0], n[1], 0.0));
CADSurfSharedPtr s = m_mesh->m_cad->GetSurf(faceid);
......@@ -534,7 +468,6 @@ void Generator2D::MakeBL(int faceid)
{
CADOrientation::Orientation edgeo =
m_mesh->m_cad->GetCurve(*it)->GetOrienationWRT(faceid);
vector<NodeSharedPtr> ns = m_curvemeshes[*it]->GetMeshPoints();
vector<NodeSharedPtr> newNs;
for (int i = 0; i < ns.size(); i++)
......@@ -543,7 +476,6 @@ void Generator2D::MakeBL(int faceid)
}
m_curvemeshes[*it] =
MemoryManager<CurveMesh>::AllocateSharedPtr(*it, m_mesh, newNs);
if (edgeo == CADOrientation::eBackwards)
{
reverse(ns.begin(), ns.end());
......@@ -551,22 +483,16 @@ void Generator2D::MakeBL(int faceid)
for (int i = 0; i < ns.size() - 1; ++i)
{
vector<NodeSharedPtr> qns;
qns.push_back(ns[i]);
qns.push_back(ns[i + 1]);
qns.push_back(nodeNormals[ns[i + 1]]);
qns.push_back(nodeNormals[ns[i]]);
ElmtConfig conf(LibUtilities::eQuadrilateral, 1, false, false);
vector<int> tags;
tags.push_back(101);
ElementSharedPtr E = GetElementFactory().CreateInstance(
LibUtilities::eQuadrilateral, conf, qns, tags);
E->m_parentCAD = m_mesh->m_cad->GetSurf(faceid);
for (int j = 0; j < E->GetEdgeCount(); ++j)
{
pair<EdgeSet::iterator, bool> testIns;
......@@ -582,36 +508,7 @@ void Generator2D::MakeBL(int faceid)
m_mesh->m_element[2].push_back(E);
}
}
for (map<int, CurveMeshSharedPtr>::iterator ic = m_curvemeshes.begin();
ic != m_curvemeshes.end(); ++ic)
{
vector<unsigned>::iterator ib =
find(m_blCurves.begin(), m_blCurves.end(), ic->first);
if (ib != m_blCurves.end())
{
continue;
}
vector<NekDouble> bloffset = ic->second->GetBLOffset();
vector<NodeSharedPtr> nodes = ic->second->GetMeshPoints();
if (bloffset[0] != 0.0)
{
nodes.erase(nodes.begin());
}
if (bloffset[1] != 0.0)
{
nodes.erase(nodes.end() - 1);
}
ic->second = MemoryManager<CurveMesh>::AllocateSharedPtr(ic->first,
m_mesh, nodes);
}
}
void Generator2D::Report()
{
if (m_mesh->m_verbose)
......
library/NekMeshUtils/SurfaceMeshing/CurveMesh.cpp
View file @ 647d3a1a
......@@ -48,15 +48,9 @@ void CurveMesh::Mesh()
m_bounds = m_cadcurve->GetBounds();
m_curvelength = m_cadcurve->GetTotLength();
ASSERTL0(m_curvelength > m_bloffset[0] + m_bloffset[1],
"Boundary layers too thick for adjacent curve");
m_numSamplePoints = int((m_curvelength - m_bloffset[0] - m_bloffset[1]) /
m_mesh->m_octree->GetMinDelta()) +
10;
ds = (m_curvelength - m_bloffset[0] - m_bloffset[1]) /
(m_numSamplePoints - 1);
m_numSamplePoints =
int(m_curvelength / m_mesh->m_octree->GetMinDelta()) + 10;
ds = m_curvelength / (m_numSamplePoints - 1);
GetSampleFunction();
......@@ -69,24 +63,28 @@ void CurveMesh::Mesh()
Ne = round(Ae);
meshsvalue.clear();
meshsvalue.push_back(0.0);
if (m_bloffset[0] > 0.0)
if (Ne + 1 < 2)
{
meshsvalue.push_back(m_bloffset[0]);
meshsvalue.resize(2);
meshsvalue[0] = 0.0;
meshsvalue[1] = m_curvelength;
Ne = 1;
}
if (Ne > 1)
else
{
GetPhiFunction();
meshsvalue.resize(Ne + 1);
meshsvalue[0] = 0.0;
meshsvalue[Ne] = m_curvelength;
for (int i = 1; i < Ne; i++)
{
int iterationcounter = 0;
bool iterate = true;
int k = i;
NekDouble ski = meshsvalue.back();
NekDouble ski = meshsvalue[i - 1];
NekDouble lastSki;
while (iterate)
{
......@@ -102,19 +100,10 @@ void CurveMesh::Mesh()
ASSERTL0(iterationcounter < 1000000, "iteration failed");
}
meshsvalue.push_back(ski);
meshsvalue[i] = ski;
}
}
if (m_bloffset[1] > 0.0)
{
meshsvalue.push_back(m_curvelength - m_bloffset[1]);
}
meshsvalue.push_back(m_curvelength);
Ne = meshsvalue.size() - 1;
NekDouble t;
Array<OneD, NekDouble> loc;
......@@ -175,7 +164,15 @@ void CurveMesh::Mesh()
ASSERTL0(Ne + 1 == m_meshpoints.size(),
"incorrect number of points in curve mesh");
CreateEdges();
// make edges and add them to the edgeset for the face mesher to use
for (int i = 0; i < m_meshpoints.size() - 1; i++)
{
EdgeSharedPtr e = boost::shared_ptr<Edge>(
new Edge(m_meshpoints[i], m_meshpoints[i + 1]));
e->m_parentCAD = m_cadcurve;
m_mesh->m_edgeSet.insert(e);
m_meshedges.push_back(e);
}
if (m_mesh->m_verbose)
{
......@@ -197,7 +194,7 @@ void CurveMesh::GetPhiFunction()
newPhi.resize(2);
newPhi[0] = 0.0;
newPhi[1] = m_bloffset[0];
newPhi[1] = 0.0;
m_ps[0] = newPhi;
......@@ -217,14 +214,13 @@ NekDouble CurveMesh::EvaluateDS(NekDouble s)
int a = 0;
int b = 0;
ASSERTL1(!(s < m_bloffset[0]) && !(s > m_curvelength - m_bloffset[1]),
"s out of bounds");
ASSERTL1(!(s < 0) && !(s > m_curvelength),"s out of bounds");
if (s <= m_bloffset[0])
if (s == 0)
{
return m_dst[0][0];
}
else if (s >= m_curvelength - m_bloffset[1])
else if (s == m_curvelength)
{
return m_dst[m_numSamplePoints - 1][0];
}
......@@ -257,14 +253,13 @@ NekDouble CurveMesh::EvaluatePS(NekDouble s)
int a = 0;
int b = 0;
ASSERTL1(!(s < m_bloffset[0]) && !(s > m_curvelength - m_bloffset[1]),
"s out of bounds");
ASSERTL1(!(s < 0) && !(s > m_curvelength),"s out of bounds");
if (s <= m_bloffset[0])
if (s == 0)
{
return m_ps[0][0];
}
else if (s >= m_curvelength - m_bloffset[1])
else if (s == m_curvelength)
{
return m_ps[m_numSamplePoints - 1][0];
}
......@@ -309,10 +304,8 @@ void CurveMesh::GetSampleFunction()
for (int i = 0; i < m_numSamplePoints; i++)
{
dsti[1] = i * ds + m_bloffset[0];
NekDouble t = (i > 0 || m_bloffset[0] > 0.0)
? m_cadcurve->tAtArcLength(dsti[1])
: m_bounds[0];
dsti[1] = i * ds;
NekDouble t = m_cadcurve->tAtArcLength(dsti[1]);
Array<OneD, NekDouble> loc = m_cadcurve->P(t);
......@@ -360,18 +353,5 @@ void CurveMesh::GetSampleFunction()
m_dst[i] = dsti;
}
}
void CurveMesh::CreateEdges()
{
// make edges and add them to the edgeset for the face mesher to use
for (int i = 0; i < m_meshpoints.size() - 1; i++)
{
EdgeSharedPtr e = boost::shared_ptr<Edge>(
new Edge(m_meshpoints[i], m_meshpoints[i + 1]));
e->m_parentCAD = m_cadcurve;
m_mesh->m_edgeSet.insert(e);
m_meshedges.push_back(e);
}
}
}
}
library/NekMeshUtils/SurfaceMeshing/CurveMesh.h
View file @ 647d3a1a
......@@ -62,43 +62,16 @@ public:
/**
* @brief default constructor
*/
CurveMesh(int id, MeshSharedPtr m, std::string expr = "0.0") : m_id(id), m_mesh(m)
CurveMesh(int id, MeshSharedPtr m, std::string expr = "0.0")
: m_id(id), m_mesh(m)
{
m_blID = m_bl.DefineFunction("x y z", expr);
m_cadcurve = m_mesh->m_cad->GetCurve(m_id);
m_bloffset.resize(2);
m_bloffset[0] = 0.0;
m_bloffset[1] = 0.0;
}
/**
* @brief alternative constructor with mesh points already created