1. 25 Dec, 2014 2 commits
  2. 24 Dec, 2014 2 commits
  3. 23 Dec, 2014 2 commits
  4. 22 Dec, 2014 7 commits
    • Dave Moxey's avatar
      Merge branch 'feature/APE-advection' into 'master' · 150cd99b
      Dave Moxey authored
      Feature/APE-advection
      
      This MR ports the advection operator in the APE class from EquationSystem::WeakDGAdvection to AdvectionWeakDG and removes the continuous galerkin code.
      
      As far as i can see, none of the existing advection classes would work for Continuous+APE. It also never had boundary conditions implemented, so i doubt anybody ever used it. Therefore i think removing it is our best choice here.
      
      I tested this branch on my local machine and on buildbot. Everything looks fine.
      
      See merge request !409
      150cd99b
    • Yan Bao's avatar
      updated the user-guid file/xml/xml-forcing · e34f5ebb
      Yan Bao authored
      e34f5ebb
    • Yan Bao's avatar
      added the filter files · cbd979b1
      Yan Bao authored
      cbd979b1
    • Dave Moxey's avatar
      Fix compile error · be22cb48
      Dave Moxey authored
      be22cb48
    • Dave Moxey's avatar
      a6d51cdb
    • Dave Moxey's avatar
      Merge branch 'feature/cardiac-benchmark' into 'master' · 59375c22
      Dave Moxey authored
      Feature/cardiac benchmark
      
      This MR adds features for completing the cardiac electrophysiology benchmark problems and support to handle using a pre-partitioned mesh to avoid excessive memory requirements on the root node. Specifically, it adds the following features:
      - Allow the mesh to be partitioned and then the solver exits (new option --part-only).
      - Support in the mesh partitioner to split mesh into a specific number of partitions rather than being fixed at the size of the row communicator (i.e. a serial process can now be used to pre-partition the mesh).
      - Allow a simulation to be started from the pre-partitioned *_xml file.
      - Added a ThresholdMin filter to complement the ThresholdMax filter.
      - Added a Benchmark filter in the Cardiac solver for outputting the activation and repolarisation times for comparing with established benchmark problems.
      
      See merge request !411
      59375c22
    • Dave Moxey's avatar
      Merge branch 'fix/GetFacePhys' into 'master' · 526ba95d
      Dave Moxey authored
      Fix/get face phys
      
      Fix to use correct memory when interpolating faces in tets, prisms and pyramids.
      
      See merge request !393
      526ba95d
  5. 21 Dec, 2014 3 commits
  6. 20 Dec, 2014 4 commits
    • Chris Cantwell's avatar
    • Chris Cantwell's avatar
      Merge branch 'fix/cmake-3.0.2-warning' into 'master' · e6dd7e22
      Chris Cantwell authored
      Fix CMake 3.0.2 warning
      
      This MR fixes a CMP0022 policy warning that appears in CMake 3.0.2, arising from a difference in the `INTERFACE_LINK_LIBRARIES` and `LINK_INTERFACE_LIBRARIES_DEBUG` properties that happens when debug/optimized versions of a library are specified in `TARGET_LINK_LIBRARIES`.
      
      See merge request !415
      e6dd7e22
    • Chris Cantwell's avatar
      Merge branch 'feature/hdg-block-precon' into 'master' · eab277eb
      Chris Cantwell authored
      Add block preconditioner for HDG
      
      This MR adds a block preconditioner for the HDG system, based on the inverse of each HDG face block, which reduces iteration counts significantly for hybrid 3D elements in comparison to the usual Jacobi preconditioner. 2/3D and parallel execution is supported. Documentation has also been added to the developer guide, based on what is presently in the Nektar++ wiki.
      
      Note that there are no tests as part of this branch, since there is no real testing framework for the preconditioners at all. Hopefully this will be added later!
      
      See merge request !397
      eab277eb
    • Chris Cantwell's avatar
      Merge branch 'fix/icc-dynamic-again' into 'master' · 47714371
      Chris Cantwell authored
      Another fix for ICC
      
      This MR follows on from !414 to fix the same issue in the VWI solver.
      
      See merge request !416
      47714371
  7. 19 Dec, 2014 2 commits
  8. 18 Dec, 2014 7 commits
  9. 17 Dec, 2014 7 commits
  10. 16 Dec, 2014 4 commits