Spencer Sherwin authored 8 years ago and Chris Cantwell committed 8 years ago

First attempt to put a root only error message but believe this will not work if an ASSERT is called before MPI_Init

FilterHistoryPoints with 3DH1D

This MR changes how `FilterHistoryPoints` works in 3DH1D:
- The points are not required to be all in the same plane any more. When `OutputPlane` is not defined, each point is positioned in one of the planes closest to its z-coordinate. Using `OutputPlane` still forces all points to be in that plane.

- By default, the output is now in physical space (this effectively replaces !516). Writing the result in wavespace is still possible using the new option `WaveSpace`.

See merge request !621

Tidy FieldConvert output messages

This MR improves the FieldConvert output messages obtained using the `verbose` option:
- A couple of messages which were displayed twice are now fixed
- The outputs from the Process modules now follow a more consistent format, and are only issued by rank 0
- The timings of the total time taken by each module are moved to FieldConvert.cpp, using a new virtual function `GetModuleName` to display the correct information. This way timings are now automatically displayed for all modules, without having to duplicate the timer code in all modules.

See merge request !626

print an error message for erroneous equations when compiled with RELEASE



See merge request !634

Fix small bug with periodic boundary conditions

This fixes a small bug that can affect simulations with periodic boundary conditions in parallel (the conditions for triggering this bug seem extremely particular).

See merge request !631

Force fftw to use the correct compiler

This is a small change to guarantee that we use the correct compiler to build fftw.

See merge request !629

Fix missing dependency on openmpi-bin for DEB packages.

This MR fixes the missing openmpi-bin dependency, which is required for packaged executables to run (even in serial without mpirun).

See merge request !630

Small fix to make DriverAdaptive more general

This is a small fix to avoid getting an error in DriverAdaptive when there is no NekManager for GlobalLinSys.

I think it is possible that after this change DriverAdaptive will work with solvers other than IncNavierStokes (if they support variable P, of course).

See merge request !618

Do not package tutorials into source package.

The MR just disables the tutorials repository from being included in the Nektar++ source packages if the submodules are cloned in the working directory.

See merge request !625

Fix/single mode

This MR fixes the linearised advection operators to work correctly with stability analysis using a full complex single mode.

See merge request !597