Commits · v3.1.0 · Mesh generation / Nektar

Feb 09, 2012

Updated library for rename of GSLib to GSMPI · 77093c0b

Chris Cantwell authored 13 years ago

Fixed GSMPI not building on Mac.
Removed warnings about deprecated functions on utilities.

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3556 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

77093c0b

Added constructor for trace map for three-dimensional expansion · af917ad1

Sergey Yakovlev authored 13 years ago

Remarks:
1) There is commented out part that deals with face orientation and reordering (it will be implemented once we finalize the face orientation notation)
2) NumDGBndryCoeffs is currently only implemented for Hexes

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3555 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

af917ad1

Added constructor for trace map for three-dimensional expansion · 74945506

Sergey Yakovlev authored 13 years ago

Added GetElementToFace() functionality (analogous to GetElementToTrace for 2D case)


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3554 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

74945506

Added specialized constructor for trace expansions to use in DisContField3D · 981bb564
Sergey Yakovlev authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3553 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
981bb564
Added specialized constructor for trace expansions to use in DisContField3D · 7d31b53a
Sergey Yakovlev authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3552 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
7d31b53a

Added AdjacentFaceOrientation enum · d6517138

Sergey Yakovlev authored 13 years ago

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3551 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

d6517138

Added v_NumDGBndryCoeffs() · 5bfc5ed0

Sergey Yakovlev authored 13 years ago

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3550 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

5bfc5ed0

Added v_NumDGBndryCoeffs() · 5628f8e6

Sergey Yakovlev authored 13 years ago

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3549 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

5628f8e6

Feb 08, 2012

Improved status output of FldToVtk utility. · ee63cd51

Chris Cantwell authored 13 years ago

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3548 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

ee63cd51

Fixed variable coefficient memory allocation error. · 48a26a37

Chris Cantwell authored 13 years ago

Added scaling and thresholding for diffusion coefficients.


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3547 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

48a26a37

Added missing capacitance term in cell model evaluation. · 3e382eb1

Chris Cantwell authored 13 years ago

Cell model substepping set by parameter in session file.
Added example of Courtemanche model.

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3546 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

3e382eb1

Fix for Courtemanche cell model · c9c85d5d

Chris Cantwell authored 13 years ago

Added forward euler timestepping for gating variables for debugging


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3545 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

c9c85d5d

Feb 07, 2012

update FieldToField, MoveMesh and FldCalcBCs utilities, add new loop VWI · 18a163c3
Andrea Isoni authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3544 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
18a163c3
Checked some bugs in the Left and Right derivative used in the Flux reconstruction approach. · 6488151d
Gianmarco Mengaldo authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3543 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
6488151d

Method for the evaluation of the correction functions changed. · 22910ae6

Gianmarco Mengaldo authored 13 years ago

Now it uses the methods implemented in LibUtilities/Foundations/Basis.cpp



git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3542 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

22910ae6

Fix in Courtemanche cell model. · 392613b8

Chris Cantwell authored 13 years ago

Fix naming conventions for Checkpointing in parallel.


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3541 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

392613b8

Inserted the derivative of the correction functions for the Flux Recontruction a · ca573676
Gianmarco Mengaldo authored 13 years ago
```
pproach.


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3540 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
ca573676
Inserted the derivative of the correction functions for the Flux Recontruction a · 4e48c09f
Gianmarco Mengaldo authored 13 years ago
```
pproach.


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3539 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
4e48c09f
Inserted the derivative of the correction functions for the Flux Recontruction approach. · c7efb429
Gianmarco Mengaldo authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3538 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
c7efb429

Cell models now time-integrated separate to PDE. · dcd449f6

Chris Cantwell authored 13 years ago

Added temporary calculation of activation time during simulation.
Most cell models and bidomain model temporarily disabled until updated.

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3537 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

dcd449f6

Added expression template evaluation without alias checking. · 4145acd9
Blake Nelson authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3536 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
4145acd9

Feb 06, 2012

Merged ExpressionTemplatePerformanceTests branch. · 4270b066

Blake Nelson authored 13 years ago

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3535 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

4270b066

Feb 03, 2012

Removed cout used for debugging · b06aea08

Alessandro Bolis authored 13 years ago

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3529 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

b06aea08

Fixed functionality for homogeneous cases in release mode · 5703864f

Alessandro Bolis authored 13 years ago

Inverted mixed derivatives order in HOPBC to improve accuracy
Modified time-stepping study meshes for long time-integration
CFL tester moved to work for anisotropic meshes

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3528 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

5703864f

Feb 02, 2012

Added regression test for Helmholtz2D with variable coefficients. · 612ff123

Chris Cantwell authored 13 years ago

Added missing variables in Derivative3DHomo1D regression test.


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3527 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

612ff123

FR: advection term multiplied by the Jacobian · e12913b6
Gianmarco Mengaldo authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3526 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
e12913b6

Feb 01, 2012

Lax-Wendroff and Lax-Friedrichs Riemann fluxes corrected. · 70639334
Gianmarco Mengaldo authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3525 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
70639334

Changed the computation of the derivatives: Polylib::jacobfd to Polylib::jacobd · c7b52f61

Gianmarco Mengaldo authored 13 years ago

Changed some comments and the output and post-processing files


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3524 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

c7b52f61

Jan 31, 2012

Added 3D support for variable coefficients on Laplacian. · d6575730

Chris Cantwell authored 13 years ago

Added variables for membrane capacitance and surface-area ratio to
  CardiacEPSolver


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3522 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

d6575730

update FieldToField · b1434bbf

Andrea Isoni authored 13 years ago

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3521 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

b1434bbf

Removing old unused code · b16db9a9

Pavel Burovskiy authored 13 years ago

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3520 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

b16db9a9

add FieldToField utility for interpolation of 2D field into a different mesh · ffff0ea1
Andrea Isoni authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3519 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
ffff0ea1

Jan 30, 2012

MeshConvert additions: boundary condition support to Nektar input module, · 2f49ff37

Dave Moxey authored 13 years ago

ability to disable reorientation of tets/prisms, input module for Swansea mesh
format. Temporarily disabled face node output in Nektar++ output.

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3518 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

2f49ff37

Jan 28, 2012
- Removing string copying overheads on Equation::Evaluate() calls · c0dddc9b
  Pavel Burovskiy authored 13 years ago
  
  git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3517 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
  c0dddc9b
Jan 27, 2012

Efficiency update for physcal derivatives of the homogeneous cases · 1d1d8f5a

Alessandro Bolis authored 13 years ago

Added regression tests to check physical derivatives of the homogeneous cases
Modified BCs conditions in meshes for time-integration studies

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3516 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

1d1d8f5a

Jan 26, 2012
- Added better support for inputting variable coefficients in CardiacEPSolver. · 6cfebb34
  Chris Cantwell authored 13 years ago
  
  git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3514 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
  6cfebb34
Jan 25, 2012

Reduced default tolerance of iterative solver. · 374b9e8d

Chris Cantwell authored 13 years ago

Tolerance can be set as IterativeSolverTolerance parameter in session.
Removed two redundant dot products in iterative solver.

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3513 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

374b9e8d

Added High-Order Pressure BCs Map to improve efficiency for Homogeneous Cases · b09ecaca

Alessandro Bolis authored 13 years ago

Elemntal Inner Product method moved to be inline
Added virtual Elemenatal Inner Product for homogeneous cases
Fixed bug in derivation routines for homogeneous 2D

git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3512 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

b09ecaca

3D Navier-Stokes tet related stuff and bug fixes · 33090ed3
Andrew Comerford authored 13 years ago
```
git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3511 305cdda6-5ce1-45b3-a98d-dfc68c8b3305
```
33090ed3

Jan 24, 2012

update FldCalcBcs,MoveMesh, evaluation bcs from files for 2D cases, · bf579830

Andrea Isoni authored 13 years ago

 add reg test for N bcs different from 0 using coupled solver


git-svn-id: https://gforge.sci.utah.edu/svn/nektar/trunk@3508 305cdda6-5ce1-45b3-a98d-dfc68c8b3305

bf579830