Updated MeshConvert references to NekMesh and also added in an ARCHIVE option...

Updated MeshConvert references to NekMesh and also added in an ARCHIVE option to the cylinder case since this seemed to be missing

flow-stability/bfs/flow-stability-bfs.tex

@@ -76,7 +76,7 @@ elements.
 \item Folder \texttt{base}
 \begin{itemize}
 \item \texttt{bfs-Base.xml} - \nektar session file, generated with the
-\texttt{\$NEK/MeshConvert} utility, for computing the base flow.
+\texttt{\$NEK/NekMesh} utility, for computing the base flow.
 \item \texttt{bfs-Base.fld} - \nektar field file that contains the base flow,
 generated using \\\texttt{bfs-Base.xml}.
 \end{itemize}
@@ -84,7 +84,7 @@ generated using \\\texttt{bfs-Base.xml}.
 \item Folder \texttt{stability}
 \begin{itemize}
 \item \texttt{bfs\_tg.xml} - \nektar session file, generated with
-\texttt{\$NEK/MeshConvert}, for performing the transient growth analysis.
+\texttt{\$NEK/NekMesh}, for performing the transient growth analysis.
 \item \texttt{bfs\_tg.bse} - \nektar field file that contains the base flow. 
 It is the same as the \texttt{.fld} file present in the folder \texttt{Base}.
 \end{itemize}

flow-stability/cylinder/CMakeLists.txt

 ADD_NEKTAR_TUTORIAL(PDF HTML TARGET flow-stability-cylinder
     HTML_BREAK_LEVEL 2
     BASE flow-stability-cylinder
-    STYLING_FILE styling.cfg)
-
+    STYLING_FILE styling.cfg
+    ARCHIVE flow-stability-cylinder)
+    
 # Add tests only if we are building from within the Nektar++ tree
 IF (DEFINED NEKTAR_BUILD_TESTS)
     ADD_NEKTAR_TUTORIAL_TEST(IncNavierStokesSolver flow-stability-cylinder-base)

flow-stability/cylinder/flow-stability-cylinder.tex

@@ -75,21 +75,21 @@ elements.
 \item Folder \texttt{base}
 \begin{itemize}
 \item \texttt{Cylinder-Base.xml} - \nektar session file, generated with the
-\texttt{\$NEK/MeshConvert} utility, for computing the base flow.
+\texttt{\$NEK/NekMesh} utility, for computing the base flow.
 \item \texttt{Cylinder-Base.fld} - \nektar field file that contains the base flow,
 generated using \\\texttt{Cylinder-Base.xml}.
 \end{itemize}
 
 \item Folder \texttt{stability/Direct}
 \begin{itemize}
-\item \texttt{Cylinder\_Direct.xml} - \nektar session file, generated with \texttt{\$NEK/MeshConvert}.
+\item \texttt{Cylinder\_Direct.xml} - \nektar session file, generated with \texttt{\$NEK/NekMesh}.
 \item \texttt{Cylinder\_Direct.bse} - \nektar field file that contains the base flow. 
 \item \texttt{Cylinder\_Direct.rst} - \nektar field file that contains the initial conditions.
 \end{itemize}
 
 \item Folder \texttt{stability/Adjoint}
 \begin{itemize}
-\item \texttt{Cylinder\_Adjoint.xml} - \nektar session file, generated with \texttt{\$NEK/MeshConvert}.
+\item \texttt{Cylinder\_Adjoint.xml} - \nektar session file, generated with \texttt{\$NEK/NekMesh}.
 \item \texttt{Cylinder\_Adjoint.bse} - \nektar field file that contains the base flow. 
 \item \texttt{Cylinder\_Adjoint.rst} - \nektar field file that contains the initial conditions.
 \end{itemize}
@@ -121,7 +121,7 @@ variations in the size of the elements should be avoided.}
 \chapter{Computation of the base flow} 
 \texttt{Cylinder-Base.xml} can be found inside the \texttt{\$NEKTUTORIAL/base} 
 folder. 
-This is the \nektar file generated using \texttt{\$NEK/MeshConvert} and augmented 
+This is the \nektar file generated using \texttt{\$NEK/NekMesh} and augmented 
 with all the configuration settings that are required. In this case, CFL conditions 
 can be particularly restrictive and the time step must be set around $8 \times 
 10^{-4}$. We will be using Reynolds number $Re=42$ for this study.